Information for 5-ARMAGGTCARTKWKKT (Motif 10)

C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
Reverse Opposite:
C G T A G T C A G T C A C G T A G T C A C G T A G A T C A C G T A C T G C G T A G T A C A G T C A C G T A C G T G A T C A C G T
p-value:1e-12
log p-value:-2.887e+01
Information Content per bp:1.812
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.0 +/- 26.6bp
Average Position of motif in Background73.1 +/- 12.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:ARMAGGTCARTKWKKT
---AGGTCA-------
 C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ARMAGGTCARTKWKKT
ATCAAGGTCA-------
 A C G T C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ARMAGGTCARTKWKKT
-TRAGGTCA-------
 C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ARMAGGTCARTKWKKT
--AAGGTCAC------
 C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ARMAGGTCARTKWKKT
-AGRGGTCA-------
 C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ARMAGGTCARTKWKKT-----
-NGAGGTCANNGAGTTCANNN
 C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ARMAGGTCARTKWKKT
ANGNAAAGGTCA-------
 A C G T A C G T A C G T C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ARMAGGTCARTKWKKT
TCTCAAAGGTCACGAG---
 A C G T A C G T A C G T C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ARMAGGTCARTKWKKT
TCTCAAAGGTCACCTG---
 A C G T A C G T A C G T C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------ARMAGGTCARTKWKKT
GAGGTCAAAAGGTCAATG----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G T G C A C G T A A C T G A C T G A C G T A G T C C G T A C T A G A C G T A C G T C G A T A C G T A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G A C G T A C G T A C G T A C G T