Information for 12-AGGGCAAGCT (Motif 25)

C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
Reverse Opposite:
C G T A C T A G G T A C A G C T A C G T A C T G T G A C A G T C A T G C C G A T
p-value:1e-8
log p-value:-1.920e+01
Information Content per bp:1.832
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif265.2
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets54.0 +/- 20.3bp
Average Position of motif in Background48.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAAGCT
TNNGGGCAG---
 A C G T A C G T C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAGCT
TRAGGTCA----
 A C G T A C G T C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGCT-
AAGGCAAGTGT
 C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGGGCAAGCT-
----CAAGCTT
 C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T A C G T
A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGCT--
AGGTCAAGGTCA
 C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAGCT
CAAGGHCANV--
 A C G T A C G T C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAGCT
AAGGTCAC---
 A C G T C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGGCAAGCT
CAAAGGTCAG---
 A C G T A C G T A C G T C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGCT
AGGTCA----
 C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAAGCT
NGTGGGCAT---
 A C G T A C G T C G T A A T C G A C T G A C T G T G A C G T C A C T G A C A T G G A T C C G A T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T