Information for 7-AGTTAATGCT (Motif 19)

C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T
Reverse Opposite:
C T G A A T C G A G T C C G T A A G C T A G C T C G T A C G T A G T A C A C G T
p-value:1e-9
log p-value:-2.179e+01
Information Content per bp:1.861
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets28.7 +/- 22.3bp
Average Position of motif in Background58.5 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGTTAATGCT
-GKTAATGR-
 C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTTAATGCT----
GATAATTAATCCCTCTT
 A C G T A C G T A C G T C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGTTAATGCT----
NANANTTAATCCCNNNN
 A C G T A C G T A C G T C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0123.1_Obox3/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATGCT-----
ATAGTTAATCCCCCNNA
 A C G T A C G T C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATGCT----
NNAATTAATGACCNNN
 A C G T A C G T C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

MYBL1/MA0776.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATGCT
ACCGTTAACGGT
 A C G T A C G T C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T
C T G A G T A C T A G C C A T G A G C T G C A T C G T A C T G A A G T C A T C G A C T G G A C T

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGTTAATGCT
-TTTAAT---
 C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T
A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAATGCT-----
NTAGTTAATCCCCTTAN
 A C G T A C G T C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTTAATGCT-
-GTTAATGGCC
 C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

HNF1A/MA0046.2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGTTAATGCT-----
NGTTAATNATTAACN
 C G T A A C T G A C G T C G A T T C G A C T G A A C G T A C T G A T G C A G C T A C G T A C G T A C G T A C G T A C G T
C G T A C A T G A G C T G C A T C T G A G T C A G C A T A T G C C G T A C A G T G A C T C G T A T C G A G A T C G A C T