Information for 11-AGAGSTCRWGGSA (Motif 18)

C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C A G T C G C A T A G C T A C T G C T G A A T C G A T G C A C G T A G T C A C G T
p-value:1e-9
log p-value:-2.258e+01
Information Content per bp:1.869
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif12.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets50.6 +/- 24.9bp
Average Position of motif in Background51.6 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGAGSTCRWGGSA
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGSTCRWGGSA
CAAAGGTCAAGGG-
 A C G T C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGAGSTCRWGGSA
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAGSTCRWGGSA
AGRGGTCA-----
 C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGAGSTCRWGGSA-
--AGGTCAAGGTCA
 C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGAGSTCRWGGSA-
--AGGTCAAGGTCA
 C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGAGSTCRWGGSA
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AGAGSTCRWGGSA
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGSTCRWGGSA
TRAGGTCA-----
 C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAGSTCRWGGSA
ANGNAAAGGTCA-----
 A C G T A C G T A C G T A C G T C G T A C T A G C G T A A T C G A T G C A G C T A G T C C T G A C G T A A C T G A C T G A T G C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T