Information for 1-CAATGCCAGC (Motif 3)

A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
Reverse Opposite:
A C T G T A G C A C G T A C T G A T C G A T G C C G T A A G C T A C G T A C T G
p-value:1e-10
log p-value:-2.480e+01
Information Content per bp:1.852
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif93.8
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets45.9 +/- 27.1bp
Average Position of motif in Background48.0 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.76
Offset:2
Orientation:forward strand
Alignment:CAATGCCAGC-
--ATGCCAACC
 A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CAATGCCAGC-----
ACTATGCCAACCTACC
 A C G T A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAATGCCAGC
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAATGCCAGC
CAAGGHCANV
 A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CAATGCCAGC-
--ATGCCCACC
 A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C A C G T
A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAATGCCAGC
NTCAAGGTCA--
 A C G T A C G T A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAATGCCAGC
BTCAAGGTCA--
 A C G T A C G T A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAATGCCAGC
-CGTGCCAAG
 A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAATGCCAGC
---TGCCAA-
 A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAATGCCAGC-----
GATATTGACAGCTGCGT
 A C G T A C G T A G T C C G T A C T G A G C A T A T C G A T G C A G T C G T C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T