Information for 5-TGTGAGAYGYTKK (Motif 4)

A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
Reverse Opposite:
G T C A G T A C C G T A C T A G A G T C C T G A A C G T A G T C C G A T A G T C C G T A A G T C G T C A
p-value:1e-13
log p-value:-3.052e+01
Information Content per bp:1.869
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.4 +/- 32.5bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MGA/MA0801.1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGAYGYTKK
AGGTGTGA--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGAYGYTKK
AGGTGTGA--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGAYGYTKK
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGTGAGAYGYTKK
AGGTGTGAAM----
 A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T A C G T A C G T

TBX15/MA0803.1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGAYGYTKK
AGGTGTGA--------
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TGTGAGAYGYTKK
AGGTGTGAAA------
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------TGTGAGAYGYTKK
GAAAAGGTGTGAAAATT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T A C G T A C G T A C G T

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGTGAGAYGYTKK
AAGGTGTGAAAAT----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C T G A C T G A C T A G A C T G A G C T T C A G G A C T A C T G T C G A G C T A G T C A C G T A G A C T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGTGAGAYGYTKK
NNGCGTGTGTGCNGCN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGTGAGAYGYTKK
AAGGTGTGAAA------
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A C T G G T C A A G C T A C T G A G T C C G A T A C T G A C G T
C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T