Information for 3-AAAATTAGGA (Motif 3)

C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
Reverse Opposite:
G A C T T A G C A T G C G A C T C G T A C T G A A G C T A C G T A C G T A G C T
p-value:1e-11
log p-value:-2.567e+01
Information Content per bp:1.761
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif64.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets47.9 +/- 26.8bp
Average Position of motif in Background44.8 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEF2C/MA0497.1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AAAATTAGGA
ATGCTAAAAATAGAA
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

Dlx1/MA0879.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AAAATTAGGA
CCTAATTATC-
 A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAAATTAGGA
DCYAAAAATAGM-
 A C G T A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AAAATTAGGA
GCTAAAAATAGC-
 A C G T A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AAAATTAGGA
KCCAAAAATAGC-
 A C G T A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAAATTAGGA
NTAATTAG--
 C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAAATTAGGA
NTAATTAG--
 C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------AAAATTAGGA
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------AAAATTAGGA
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAAATTAGGA
CCAAAAATAG--
 A C G T A C G T C T G A C G T A G T C A C T G A G A C T C G A T C G T A A T C G A T C G C T G A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T