Information for 13-TGCVTGCATGCAT (Motif 22)

A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
Reverse Opposite:
C T G A A C G T A C T G A G T C G T C A A G C T A C T G A G T C C T G A A C G T C T A G A G T C G T C A
p-value:1e-5
log p-value:-1.358e+01
Information Content per bp:1.843
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.4 +/- 25.6bp
Average Position of motif in Background43.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGCVTGCATGCAT
---TTGCGTGCVA
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGCVTGCATGCAT
----TGCGTG---
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGCVTGCATGCAT
TGCCCTNGGGCA-
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGCVTGCATGCAT
TGCCCTNGGGCA-
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGCVTGCATGCAT
TGCCCNGGGGCA-
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCVTGCATGCAT
TTGCCCTAGGGCAT
 A C G T A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGCVTGCATGCAT---
-SCAGYCADGCATGAC
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGCVTGCATGCAT------
--AAAATATGCATAATAAA
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:TGCVTGCATGCAT----
-------ATGMATATDC
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TGCVTGCATGCAT----
-GCAGCCAAGCGTGACN
 A C G T A C T G A G T C T C G A A G C T A C T G A G T C C T G A A C G T A C T G A G T C G T C A A G C T A C G T A C G T A C G T A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C