Information for 1-GCAGCGCCCCCGGCAG (Motif 2)

A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C T A G C A C T G A C T G C T A G C T A G A C T G A G T C A C T G A G T C A C G T A C T G A G T C
p-value:1e-12
log p-value:-2.838e+01
Information Content per bp:1.890
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.7 +/- 21.6bp
Average Position of motif in Background74.6 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.3/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG
----CGCCTCAGGCA-
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCAGCGCCCCCGGCAG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG
----AGCCTCAGGCA-
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG
----AGCCTCAGGCA-
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG-
--ATTGCCTCAGGCAAT
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G A C G T
A C G T A C G T C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG---
----GACCCCCCGCTGTGC
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Sp1(Zf)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAGCGCCCCCGGCAG
GGCCCCGCCCCC-----
 A C G T A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G
T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG---
----GGCCYCCTGCTGDGH
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGCGCCCCCGGCAG-
--NTNGCCTCAGGCNNN
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G A C G T
A C G T A C G T G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T

ZIC3/MA0697.1/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCAGCGCCCCCGGCAG---
----GACCCCCCGCTGCGC
 A C T G G T A C C G T A A C T G A G T C A C T G A G T C A G T C A G T C A G T C G T A C A T C G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C