Information for 7-CAGCCAGCGGTGA (Motif 10)

A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C G T C A A G T C A G T C A C T G A T G C A C G T A C T G A C T G A T G C A G C T A C T G
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.2 +/- 27.5bp
Average Position of motif in Background69.1 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCGGTGA-
SCAGYCADGCATGAC
 A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAGCGGTGA--
GCAGCCAAGCGTGACN
 A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAGCCAGCGGTGA
---CCAGCTGTTN
 A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAGCGGTGA
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAGCGGTGA
GACCCCCCGCTGTGC
 A C G T A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGCCAGCGGTGA
CCCCCTGCTGTG-
 A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCGGTGA
NTGCCCANNGGTNA
 A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAGCGGTGA
GACCCCCCGCTGTG-
 A C G T A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAGCGGTGA
GACCCCCCGCTGCGC
 A C G T A C G T A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGCCAGCGGTGA
-NAHCAGCTGD--
 A G T C C T G A A T C G A G T C A G T C C G T A A T C G A G T C A C T G A C T G A C G T A C T G C G T A
A C G T G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T