Information for 4-AKGAGKGRTGSCG (Motif 7)

C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
Reverse Opposite:
A G T C A C T G A T G C A G T C C G T A A G C T A G T C T G A C A G T C A C G T A G T C G T C A A C G T
p-value:1e-10
log p-value:-2.434e+01
Information Content per bp:1.871
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.3 +/- 18.5bp
Average Position of motif in Background17.7 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AKGAGKGRTGSCG
ATGATKGATGRC-
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T

NFE2/MA0841.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AKGAGKGRTGSCG
GATGAGTCATN---
 A C G T C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T A C G T A C G T

Atf3/MA0605.1/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AKGAGKGRTGSCG-
------GATGACGT
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T

JDP2/MA0655.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AKGAGKGRTGSCG
ATGAGTCAT----
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AKGAGKGRTGSCG--
NNTNAGGGGCGGNNNN
 A C G T C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G A C G T A C G T
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AKGAGKGRTGSCG
TTTGATTGATGN--
 A C G T C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AKGAGKGRTGSCG
-TGATTRATGGCY
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AKGAGKGRTGSCG---
-----TAATGGCGGNC
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AKGAGKGRTGSCG
TTGAGTGSTT---
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AKGAGKGRTGSCG
-TGATTGATGA--
 C G T A A C G T A C T G C G T A A C T G A C T G A C T G C T G A C G A T A C T G T A C G A G T C A C T G
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T