Information for 3-CCAGGACGCCCGC (Motif 3)

A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C
Reverse Opposite:
A C T G A T G C A C T G A C T G A C T G A G T C A C T G A G C T A T G C A G T C A C G T A T C G A C T G
p-value:1e-11
log p-value:-2.539e+01
Information Content per bp:1.896
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets62.8 +/- 16.5bp
Average Position of motif in Background56.0 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCAGGACGCCCGC
--AGCGCGCC---
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGACGCCCGC--
NNNGGGGCGCCCCCNN
 A C G T A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCAGGACGCCCGC-----
-GGTCCCGCCCCCTTCTC
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGACGCCCGC
ATTTCCCAGVAKSCY---
 A C G T A C G T A C G T A C G T A C G T A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCAGGACGCCCGC---
----YCCGCCCACGCN
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C C T A G A T G C T C G A

KLF14/MA0740.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAGGACGCCCGC--
-GGCCACGCCCCCTT
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T
A C G T C A T G T C A G G T A C A G T C T G C A G A T C T C A G A T G C A G T C A G T C G T A C G A T C G A C T G A C T

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCAGGACGCCCGC-
ATAAGGGCGCGCGAT
 A C G T A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAGGACGCCCGC------
---TGGCGCGCGCGCCTGA
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

HINFP/MA0131.2/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CCAGGACGCCCGC--
---CAACGTCCGCGG
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T
A C G T A C G T A C G T A T G C T G C A T C G A A T G C A T C G A C G T A T G C A G T C A T C G A T G C C A T G A C T G

EGR2/MA0472.2/Jaspar

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CCAGGACGCCCGC---
-----ACGCCCACGCA
 A G T C A T G C C G T A A C T G A T C G C T G A A G T C A C T G A G T C G T A C G T A C A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A G T C C T A G A G T C T G A C A G T C T G C A A G T C C A T G A G T C C T G A