Information for 8-GACAGACGCA (Motif 14)

A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
Reverse Opposite:
A C G T A T C G A G T C T C A G A G C T G T A C A C G T A C T G A G C T A T G C
p-value:1e-8
log p-value:-1.944e+01
Information Content per bp:1.836
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif188.9
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets47.0 +/- 28.6bp
Average Position of motif in Background50.0 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GACAGACGCA--
AGCAACAGCCGCACC
 A C G T A C G T A C G T A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A A C G T A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GACAGACGCA-
-CCAGACRSVB
 A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GACAGACGCA
-CCAGACAG-
 A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GACAGACGCA
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GACAGACGCA
ATGCCAGACN--
 A C G T A C G T A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GACAGACGCA
TTGACAG-----
 A C G T A C G T A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACAGACGCA
GCCACACCCA
 A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GACAGACGCA
AGGTGNCAGACAG-
 A C G T A C G T A C G T A C G T A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GACAGACGCA
AACAGATGGT
 A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GACAGACGCA
TTGACAGG----
 A C G T A C G T A T C G T C G A A G T C T G C A A C T G C T G A A G T C C T A G A T G C G T C A
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T