Information for 6-AGCCTGCACG (Motif 12)

C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G
Reverse Opposite:
G T A C A C T G G A C T A C T G A G T C C T G A C A T G T C A G G A T C G A C T
p-value:1e-9
log p-value:-2.116e+01
Information Content per bp:1.830
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif248.2
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets46.0 +/- 21.1bp
Average Position of motif in Background48.7 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGCCTGCACG---
-----GCACGTAY
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:AGCCTGCACG---
-----GCACGTNC
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGCCTGCACG--
----BGCACGTA
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

NRF1/MA0506.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGCCTGCACG
GCGCCTGCGCA
 A C G T C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.63
Offset:5
Orientation:forward strand
Alignment:AGCCTGCACG-----
-----GCACGTACCC
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

Hes1/MA1099.1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AGCCTGCACG----
----GGCACGCGTC
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGCCTGCACG---
---TBGCACGCAA
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:AGCCTGCACG--
------CACGCA
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Id2/MA0617.1/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGCCTGCACG---
-----GCACGTGA
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A

Arnt/MA0004.1/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:AGCCTGCACG--
------CACGTG
 C T G A C T A G A G T C G T A C A G C T A C T G A G T C C T G A G T A C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G C T A C T G