Information for 2-CRGCCCGKTTCTG (Motif 3)

A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G C T G A C G T A G T C A A T G C A C T G A C T G A C T G A G T C A G C T A C T G
p-value:1e-11
log p-value:-2.637e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 17.3bp
Average Position of motif in Background52.4 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CRGCCCGKTTCTG-
NNGCACCTTTCTCC
 A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CRGCCCGKTTCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CRGCCCGKTTCTG
CTGCCCGCA----
 A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:4
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CRGCCCGKTTCTG
TCACCCCGCCCCAAATT-
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G
A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T A C G T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CRGCCCGKTTCTG
-GGCGCGCT----
 A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

KLF13/MA0657.1/Jaspar

Match Rank:6
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CRGCCCGKTTCTG
ATGCCACGCCCCTTTTTG
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CRGCCCGKTTCTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CRGCCCGKTTCTG-
ATGCCCGGGCATGT
 A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G A C G T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----CRGCCCGKTTCTG
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---CRGCCCGKTTCTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A G T C C T G A A C T G A G T C A G T C A G T C A T C G A C G T A C G T A G C T A G T C A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A