Information for 11-CAGACCTACA (Motif 14)

A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C T G C T A G A C G T A G T C A C G T A C T G
p-value:1e-10
log p-value:-2.371e+01
Information Content per bp:1.966
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.8 +/- 20.6bp
Average Position of motif in Background45.7 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGACCTACA----
TTGACCTANTTATN
 A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

TBX15/MA0803.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
TCACACCT---
 A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CAGACCTACA
ATGCCAGACN----
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
CCAGACRSVB-
 A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

TBX20/MA0689.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGACCTACA
CTTCACACCTA--
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
TCACACCT---
 A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAGACCTACA-
-TGACCTTGAT
 A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
CNAGGCCT---
 A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGACCTACA-
-TGACCTARTT
 A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGACCTACA
CCAGACAG---
 A C G T A G T C C G T A A C T G C G T A A G T C A G T C A C G T C G T A A G T C C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T