Information for 4-GCAAGATKGS (Motif 24)

A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
Reverse Opposite:
A T G C A G T C G T C A C G T A A C G T A T G C A G C T A C G T C T A G A G T C
p-value:1e-8
log p-value:-1.944e+01
Information Content per bp:1.733
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.12%
Number of Background Sequences with motif211.9
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets51.7 +/- 26.9bp
Average Position of motif in Background45.8 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCAAGATKGS---
-CAAGATGGCGGC
 A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G A C G T A C G T A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAAGATKGS---
-CAAGATGGCGGC
 A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G A C G T A C G T A C G T
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAAGATKGS
-CAAGCTT--
 A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAAGATKGS
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCAAGATKGS
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCAAGATKGS
AAGGCAAGTGT--
 A C G T A C G T A C G T A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCAAGATKGS
CAATTGCAAAAATAT
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------GCAAGATKGS
NATGTTGCAA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCAAGATKGS--
GWAAYHTGABMC
 A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G A C G T A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCAAGATKGS
SCCTAGCAACAG---
 A C G T A C G T A C G T A C G T A C G T A C T G G A T C C G T A C T G A A T C G G T C A G C A T A C G T C T A G A T C G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T