Information for 3-CAGCAGCGCC (Motif 17)

A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C
Reverse Opposite:
A C T G A T C G G A T C A C T G A G T C A C G T A T C G G T A C C G A T C T A G
p-value:1e-9
log p-value:-2.158e+01
Information Content per bp:1.856
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif72.2
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets40.9 +/- 24.4bp
Average Position of motif in Background49.6 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGCGCC-
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CAGCAGCGCC
---CAGCC--
 A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGCGCC
CGCAGCTGCG--
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCGCC
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CAGCAGCGCC
CAGCTGNT--
 A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CAGCAGCGCC---
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGCGCC
AGCAGCTGCTNN
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCGCC--
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

PB0050.1_Osr1_1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCGCC-
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGCGCC-
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A C T G G T A C C T A G A T G C A G T C A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G