Information for 5-CMARMACTCYAGA (Motif 6)

A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
Reverse Opposite:
A C G T A G T C A C G T C T A G A T C G C G T A A C T G A C G T A C T G A G C T A C G T A C T G A C T G
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 20.8bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CMARMACTCYAGA
--RSCACTYRAG-
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CMARMACTCYAGA
-AGCCACTCAAG-
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CMARMACTCYAGA
-MRSCACTYAA--
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CMARMACTCYAGA
--NSCACTYVAV-
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CMARMACTCYAGA
-AASCACTCAA--
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CMARMACTCYAGA
-AAGCACTTAA--
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

HSF2/MA0770.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CMARMACTCYAGA-
-GAANGTTCTAGAA
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A A C G T
A C G T T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CMARMACTCYAGA--
-----ATGCCAGACN
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

HSF4/MA0771.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CMARMACTCYAGA-
-GAANNTTCTAGAA
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A A C G T
A C G T T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

HSF1/MA0486.2/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CMARMACTCYAGA-
-GAACGTTCTAGAA
 A G T C G T A C C G T A C T G A G T A C C G T A A G T C A C G T A T G C A G T C C G T A A C T G G T C A A C G T
A C G T C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A