Information for 4-CAGSGTTTGTGATGGA (Motif 2)

A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A
Reverse Opposite:
C G A T G T A C G T A C C G T A A G C T G T A C C G T A A T G C C G T A C G T A G T C A T G A C A T C G G A T C C G A T A C T G
p-value:1e-13
log p-value:-3.177e+01
Information Content per bp:1.787
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 29.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAGSGTTTGTGATGGA---
----CTTTGTTATGCAAAT
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA---
--NNCTTTGTTTTGNTNNN
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA-
--NCNTTTGTTATTTNN
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T
A C G T A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA---
----CATTGTTATGCAAAT
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA
-NNNTGTTGTTGTTNG
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A
A C G T C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA---
--NNNNNATTGATGNGTGN
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGSGTTTGTGATGGA
---CCATTGTTNY---
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A
A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA--
--NNTTTTGTTTTGATNT
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C G T
A C G T A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA----
--------ATGATKGATGRC
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CAGSGTTTGTGATGGA
----NNHTGTGGTTWN
 A G T C C G T A C A T G A T C G A C T G A C G T A C G T A C G T A T C G A C G T A C T G C T G A A C G T A C T G A C T G C G T A
A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G