Information for 11-RAGAAAAYMTWKTART (Motif 10)

C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
Reverse Opposite:
C G T A A G C T A C G T C G T A G T A C C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T A G T C A C G T A G C T
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.856
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.8 +/- 26.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:forward strand
Alignment:RAGAAAAYMTWKTART-
---AAAAACCATTAAGG
 C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T A C G T
A C G T A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RAGAAAAYMTWKTART
AAACAAACATTC----
 C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RAGAAAAYMTWKTART
AAGATAAGATAACA--
 C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RAGAAAAYMTWKTART
WAAGTAAAYA-------
 A C G T C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RAGAAAAYMTWKTART
TATGTAAATAT------
 A C G T C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----RAGAAAAYMTWKTART
GTTAAAAAAAAAAATTA----
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-RAGAAAAYMTWKTART
AAAGTAAACA-------
 A C G T C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:forward strand
Alignment:RAGAAAAYMTWKTART---
--------ATATTAATTAA
 C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RAGAAAAYMTWKTART
AAAGTAAACA-------
 A C G T C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:RAGAAAAYMTWKTART----
----NANTATTATAATTNNN
 C T G A C G T A A C T G C G T A G T C A C G T A C G T A A G T C G T A C A C G T C G A T A C T G A C G T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A