Information for 9-TGAACTGGTT (Motif 12)

A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T
Reverse Opposite:
G T C A C G T A G T A C A G T C C G T A C T A G A G C T A C G T A G T C T C G A
p-value:1e-9
log p-value:-2.195e+01
Information Content per bp:1.850
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif67.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets63.6 +/- 25.7bp
Average Position of motif in Background53.1 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFCP2/MA0145.3/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TGAACTGGTT-
-AAACCGGTTT
 A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T
A C G T C T G A C T G A C G T A A T G C G A T C C T A G A T C G G C A T G C A T A G C T

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGAACTGGTT--
NAAACCGGTTTT
 A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T
G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGAACTGGTT------
GAAAACTAGTTAACATC
 A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0006.1_Barhl2/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGAACTGGTT---
NNNTTAATTGGTTTTT
 A C G T A C G T A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

PH0005.1_Barhl1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGAACTGGTT---
GNNTTAATTGGTTGTT
 A C G T A C G T A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

PH0108.1_Msx3/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGAACTGGTT---
NNNTTAATTGGTTTTN
 A C G T A C G T A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGAACTGGTT
NTCAAGTGGN-
 A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGAACTGGTT--
NNATNAATTGTTTNN
 A C G T A C G T A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T
G C A T C T A G C G A T C G A T A G C T G C T A C G T A G C A T C G A T T C A G C G A T A C G T G A C T G C T A A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGAACTGGTT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAACTGGTT
TGACCTARTT
 A G C T C T A G C G T A C T G A A G T C A C G T A C T G C A T G A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T