Information for 20-VCVCACCHCATGCTGA (Motif 34)

T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A
Reverse Opposite:
C A G T A T G C C G T A A C T G A G T C C G T A A C G T A T C G C G T A A C T G A C T G A C G T A C T G A G T C T A C G A T C G
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.781
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif15.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.3 +/- 19.6bp
Average Position of motif in Background59.8 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:VCVCACCHCATGCTGA-
-----CCCCCTGCTGTG
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:VCVCACCHCATGCTGA
ANCCACCTGTTGCNC-
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:VCVCACCHCATGCTGA
--CCACCTGTTGCAT-
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A
A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:VCVCACCHCATGCTGA--
---GACCCCCCGCTGCGC
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:VCVCACCHCATGCTGA-
---GACCCCCCGCTGTG
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:VCVCACCHCATGCTGA----
-----TCNCCTGCTGNGNNN
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:VCVCACCHCATGCTGA
----AACAGATGGTCN
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A
A C G T A C G T A C G T A C G T C G T A T G C A G T A C C G T A A C T G T G C A A C G T A T C G A C T G G A C T A T G C C A T G

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:VCVCACCHCATGCTGA
----ACCACATCCTGT
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A
A C G T A C G T A C G T A C G T T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:VCVCACCHCATGCTGA--
---GGCCYCCTGCTGDGH
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.59
Offset:8
Orientation:forward strand
Alignment:VCVCACCHCATGCTGA--
--------CCTGCTGAGH
 T A G C A T G C T A C G A G T C C G T A A G T C A G T C G C A T A T G C G T C A A C G T A C T G G T A C A C G T A T C G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A