Information for 2-CGCCAAGAAGAGC (Motif 2)

A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A G T C C G A T A C G T A G T C A C G T A C G T A C T G A C T G A G T C C T A G
p-value:1e-14
log p-value:-3.232e+01
Information Content per bp:1.931
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 24.3bp
Average Position of motif in Background76.6 +/- 2.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGCCAAGAAGAGC
-GCTAAAAATAGC
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGCCAAGAAGAGC
-KCCAAAAATAGC
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGCCAAGAAGAGC
CGTGCCAAG------
 A C G T A C G T A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CGCCAAGAAGAGC
TGCCAA-------
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGCCAAGAAGAGC
-DCYAAAAATAGM
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGCCAAGAAGAGC
--CCAAAAATAG-
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGCCAAGAAGAGC
GGTGCCAAGT-----
 A C G T A C G T A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGCCAAGAAGAGC
-GCTATAAATAGC
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGCCAAGAAGAGC
--CCAGGAACAG-
 A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGCCAAGAAGAGC-
ATGCTAAAAATAGAA
 A C G T A G T C A C T G A G T C G T A C T C G A C G T A A C T G C G T A C G T A A C T G C G T A A C T G A G T C A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A