Information for 12-SWGCAKSAGTGKCMCC (Motif 19)

A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G T G C A A G T C C G T A A G T C A C G T A T G C G T C A A C G T A C T G A G T C C G T A A T C G
p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.852
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.6 +/- 26.6bp
Average Position of motif in Background42.0 +/- 44.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC
---CTTGAGTGGCT--
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC
---CTYRAGTGSY---
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:SWGCAKSAGTGKCMCC-----
----ATAAATGACACCTATCA
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC
----TTGAGTGSTT--
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC-
---------TGACACCT
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC
----BTGABTGACAGS
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---SWGCAKSAGTGKCMCC-
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC
---RGTTAGTGCCCY-
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
A C G T A C G T A C G T C T G A C T A G A C G T G A C T G T C A A C T G A G C T A C T G A T G C G T A C G T A C A G C T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:SWGCAKSAGTGKCMCC
----NTGATTGACAGN
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.49
Offset:9
Orientation:forward strand
Alignment:SWGCAKSAGTGKCMCC-
---------TGTCANYT
 A T G C C G A T A C T G A G T C G T C A A C G T A T C G C G T A A C T G A C G T A C T G A C G T A G T C G T C A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T