Information for 23-CAMVCAKAGAACA (Motif 26)

G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A
Reverse Opposite:
C A G T A C T G C G A T G A C T A G T C A C G T G T A C A G C T A C T G A G T C C A T G A C G T C A T G
p-value:1e-8
log p-value:-2.068e+01
Information Content per bp:1.690
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif10.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets52.5 +/- 28.8bp
Average Position of motif in Background44.6 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAMVCAKAGAACA-
----CCAGGAACAG
 G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0194.1_Zbtb12_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAMVCAKAGAACA--
TATCATTAGAACGCT
 G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAMVCAKAGAACA
AAACAGACAAAGGAAT
 A C G T A C G T A C G T G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAMVCAKAGAACA-
----CAAAGGTCAG
 G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAMVCAKAGAACA
AGGTCATGCAAAGGTCA
 A C G T A C G T A C G T A C G T G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAMVCAKAGAACA
AGGTCAACTAAAGGTCA
 A C G T A C G T A C G T A C G T G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CAMVCAKAGAACA-
RGGTCADNNAGAGGTCAV
 A C G T A C G T A C G T A C G T G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CAMVCAKAGAACA
AGGTCACGGAGAGGTCA
 A C G T A C G T A C G T A C G T G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAMVCAKAGAACA-----
-ACTCCAAGTACTTGGAA
 G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

MEF2C/MA0497.1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CAMVCAKAGAACA
ATGCTAAAAATAGAA--
 A C G T A C G T A C G T A C G T G T A C C G T A G T A C T C A G G T A C T C G A C A T G G T C A C T A G C T G A G C T A A G T C G T C A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T