Information for 16-GCGGCCAGCAGGT (Motif 17)

T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T
Reverse Opposite:
T G C A A T G C T G A C G C A T A T C G A T G C G C A T A T C G A T C G A T G C G T A C A T C G A T G C
p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.466
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets65.3 +/- 18.0bp
Average Position of motif in Background52.5 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GCGGCCAGCAGGT----
--DCHCAGCAGGRGGCC
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:forward strand
Alignment:GCGGCCAGCAGGT--
---CACAGCAGGGGG
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCGGCCAGCAGGT--
CCACACAGCAGGAGA
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCGGCCAGCAGGT
--DCTCAGCAGG-
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCGGCCAGCAGGT--
CCACACAGCAGGAGA
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:GCGGCCAGCAGGT----
-----SDGCAGGTGCNS
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCGGCCAGCAGGT
-----CAGCTGNT
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GCGGCCAGCAGGT-
----NCAGCTGCTG
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GCGGCCAGCAGGT-
----CCAGCTGTTN
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCGGCCAGCAGGT
-VNAVCAGCTGGC
 T A C G T A G C C A T G T A C G T A G C T A G C C G T A T A C G T A G C C G T A A C T G T A C G A C G T
A C G T T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C