Information for 5-GSCTGGCAGCGGGCTC (Motif 10)

A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
Reverse Opposite:
A C T G G C T A A C T G A G T C A G T C T A G C T A C G G A T C G A C T A C T G A G T C A G T C C G T A A C T G A T G C G T A C
p-value:1e-12
log p-value:-2.895e+01
Information Content per bp:1.708
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets58.2 +/- 22.0bp
Average Position of motif in Background67.8 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GSCTGGCAGCGGGCTC
GGTCTGGCAT-------
 A C G T A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GSCTGGCAGCGGGCTC
--CTGGCAGNCTGCCA
 A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GSCTGGCAGCGGGCTC
--TTGGCA--------
 A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GSCTGGCAGCGGGCTC
-CTTGGCAA-------
 A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GSCTGGCAGCGGGCTC
-NTTGGCANN------
 A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GSCTGGCAGCGGGCTC
CTGTCTGG----------
 A C G T A C G T A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GSCTGGCAGCGGGCTC-
-CTTGGCANNNTGCCAA
 A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GSCTGGCAGCGGGCTC
GYCTGGYYTNTGTCA-
 A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GSCTGGCAGCGGGCTC
TWGTCTGV----------
 A C G T A C G T A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GSCTGGCAGCGGGCTC
WDNCTGGGCA-------
 A C G T A C T G A T C G A G T C A C G T A C T G A C T G T G A C C T G A C T A G A T G C A T C G C T A G T C A G G T A C C G A T T G A C
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T