Information for 11-TTACCCTGCT (Motif 29)

A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G A T G C C G T A C A T G A C T G A C T G G A C T C G T A G T C A
p-value:1e-7
log p-value:-1.732e+01
Information Content per bp:1.854
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif59.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets40.7 +/- 26.5bp
Average Position of motif in Background54.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTACCCTGCT---
-CCCCCTGCTGTG
 A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TTACCCTGCT----
----CCTGCTGAGH
 A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTACCCTGCT------
-TCNCCTGCTGNGNNN
 A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTACCCTGCT------
-TNTCCTGCTGTGNNG
 A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTACCCTGCT
BNTGDCCTTG--
 A C G T A C G T A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTACCCTGCT--
NNCNTGACCCCGCTCT
 A C G T A C G T A C G T A C G T A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTACCCTGCT------
-NNTCCTGCTGTGNNN
 A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTACCCTGCT
GCTGTTACCCT---
 A C G T A C G T A C G T A C G T A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T
A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTACCCTGCT----
GGCCYCCTGCTGDGH
 A C G T A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T A C G T A C G T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTACCCTGCT
NNACTTACCTN---
 A C G T A C G T A C G T A C G T A C G T G C A T C T G A A G T C A G T C G T A C A C G T A T C G A G T C A C G T
C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G A C G T A C G T A C G T