Information for 11-ACAGCCTGCCTGG (Motif 19)

C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C G T A C T G C A A C T G A C T G A G T C C G T A A T C G A C T G A T G C A C G T A C T G A C G T
p-value:1e-9
log p-value:-2.202e+01
Information Content per bp:1.928
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.5 +/- 30.6bp
Average Position of motif in Background57.4 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ACAGCCTGCCTGG
-NNACTTGCCTT-
 C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:ACAGCCTGCCTGG
-----CTGTCTGG
 C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ACAGCCTGCCTGG----
---ACATGCCCGGGCAT
 C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ACAGCCTGCCTGG
TGGCAGNCTGCCAG-
 A C G T A C G T C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACAGCCTGCCTGG--
GGGGCTYGKCTGGGA
 C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G A C G T A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ACAGCCTGCCTGG
GAGCACAGCAGGACA--
 A C G T A C G T A C G T A C G T C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:ACAGCCTGCCTGG
--AGCGCGCC---
 C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACAGCCTGCCTGG
CACAGN--------
 A C G T C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ACAGCCTGCCTGG
GTCATGCHTGRCTGS
 A C G T A C G T C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:ACAGCCTGCCTGG
---VBSYGTCTGG
 C G T A G T A C C G T A A T C G A G T C A T G C A C G T A C T G A G T C A G T C A C G T A C T G A C T G
A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G