Information for 4-GGCASCMGGCAGAGCS (Motif 7)

A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
Reverse Opposite:
T A C G C T A G A T G C A C G T G T A C A C G T A T C G A G T C G T A C C A G T A T C G A T G C A C G T T A C G G T A C A G T C
p-value:1e-12
log p-value:-2.851e+01
Information Content per bp:1.701
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif94.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets44.7 +/- 24.5bp
Average Position of motif in Background51.6 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCASCMGGCAGAGCS
-NNNACCGAGAGTNNN
 A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---GGCASCMGGCAGAGCS--
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GGCASCMGGCAGAGCS
---AGGTGHCAGACA-
 A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GGCASCMGGCAGAGCS
---AGGTGNCAGACAG
 A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GGCASCMGGCAGAGCS--
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GGCASCMGGCAGAGCS
----CCAGGAACAG--
 A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-GGCASCMGGCAGAGCS
CGCCCCCTGACA-----
 A C G T A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.48
Offset:8
Orientation:reverse strand
Alignment:GGCASCMGGCAGAGCS--
--------CCAGACRSVB
 A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.47
Offset:0
Orientation:forward strand
Alignment:GGCASCMGGCAGAGCS
GGCCYCCTGCTGDGH-
 A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:10
Score:0.46
Offset:-4
Orientation:forward strand
Alignment:----GGCASCMGGCAGAGCS
AAGGKGRCGCAGGCA-----
 A C G T A C G T A C G T A C G T A C T G C A T G A T G C G T C A T A C G A T G C G T C A A C T G C T A G A T G C C G T A A C T G C G T A A T C G A G T C A T G C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T A C G T