Information for 7-TGGCCCCGGCGAC (Motif 13)

A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C
Reverse Opposite:
A C T G A G C T A G T C A C T G A G T C A G T C A C T G A C T G A C T G C T A G A G T C A T G C C G T A
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.892
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 33.6bp
Average Position of motif in Background47.6 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCCCCGGCGAC-
TTGCCATGGCAACN
 A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCCCCGGCGAC
GTTGCCATGGCAAC
 A C G T A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TGGCCCCGGCGAC
-GGCCCCGCCCCC
 A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C
A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCCCCGGCGAC-
GTTGCCATGGCAACM
 A C G T A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCCCGGCGAC--
GTTGCCATGGCAACCG
 A C G T A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCCCCGGCGAC
NNANTTGACCCCTNNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TGGCCCCGGCGAC
AAGGKGRCGCAGGCA--
 A C G T A C G T A C G T A C G T A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGGCCCCGGCGAC-
--TCCCNNGGGACN
 A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C A C G T
A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGGCCCCGGCGAC
-GTCCCCAGGGGA
 A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C
A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TGGCCCCGGCGAC--
---SCCTAGCAACAG
 A C G T A T C G C T A G A G T C A G T C A G T C A G T C A C T G A C T G A G T C A C T G C T G A A G T C A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G