Information for 2-CATGTATGTGTAT (Motif 3)

A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
Reverse Opposite:
C G T A A G C T C G T A A G T C C G T A A G T C C G T A A C G T C T G A A T G C C G T A A C G T A C T G
p-value:1e-13
log p-value:-3.037e+01
Information Content per bp:1.938
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 31.4bp
Average Position of motif in Background6.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CATGTATGTGTAT--
YATGCATATRCATRT
 A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CATGTATGTGTAT
CTCATGAATATTCAT
 A C G T A C G T A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CATGTATGTGTAT
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CATGTATGTGTAT
NNTNTCATGAATGT----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CATGTATGTGTAT
TAAATACATGTAAAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CATGTATGTGTAT
AAAATACATGTAAAAAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T A C G T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CATGTATGTGTAT---
--TGTATATATATACC
 A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

FOXH1/MA0479.1/Jaspar

Match Rank:8
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CATGTATGTGTAT----
------TGTGGATTNNN
 A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CATGTATGTGTAT---
----NNTGTGGATTSS
 A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

PH0086.1_Irx5/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CATGTATGTGTAT
AATATACATGTAAAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T C G A G C T C G T A A C G T A C T G A C G T A C T G A C G T C T G A A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T A C G T