Information for 5-AATGGCCTATAAAACC (Motif 7)

C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
Reverse Opposite:
A C T G A T C G A G C T A C G T A C G T A C G T C G T A C G A T G C T A A C T G T A C G A G T C G A T C C G T A C G A T A C G T
p-value:1e-11
log p-value:-2.700e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.7 +/- 20.4bp
Average Position of motif in Background21.0 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:AATGGCCTATAAAACC
-----CCAATAAAAC-
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:AATGGCCTATAAAACC
-----CCAATAAAAA-
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AATGGCCTATAAAACC
----NCYAATAAAA--
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.65
Offset:5
Orientation:forward strand
Alignment:AATGGCCTATAAAACC
-----CCAATAAAAA-
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AATGGCCTATAAAACC--
--CTACCAATAAAATTCT
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C A C G T A C G T
A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AATGGCCTATAAAACC
----GNCTATAAAAGG
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AATGGCCTATAAAACC
----NGCAATTAAA--
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:AATGGCCTATAAAACC
----CCYMATAAAA--
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C
A C G T A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.63
Offset:6
Orientation:forward strand
Alignment:AATGGCCTATAAAACC-----
------GTATAAAAGGCGGGG
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.63
Offset:6
Orientation:forward strand
Alignment:AATGGCCTATAAAACC-----
------GTATAAAAGGCGGGG
 C G T A C G T A C G A T C A T G A C T G A G T C T G A C C A G T C G T A C G A T C G T A C G T A C G T A C T G A A T G C T G A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G