Information for 1-AAGGCATATACCT (Motif 3)

C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T C G T A A C G T C G T A A C G T A T C G G T A C G T A C A C G T A C G T
p-value:1e-14
log p-value:-3.357e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.5 +/- 19.3bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGGCATATACCT
-ATGMATATDC--
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAGGCATATACCT---
-ATGAATATTCATGAG
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AAGGCATATACCT--
-----RYHYACCTGB
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGGCATATACCT--
YATGCATATRCATRT
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T A C G T A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGGCATATACCT----
ATGGGATATATCCGCCT
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGGCATATACCT
AAGGCAAGTGT--
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AAGGCATATACCT
-ATGAATATTC--
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

TEAD1/MA0090.2/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AAGGCATATACCT-
----CACATTCCAT
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AAGGCATATACCT
ATATGCAAATNNN-
 A C G T C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AAGGCATATACCT-
---NNACTTACCTN
 C G T A C G T A A C T G A C T G A T G C C G T A C G A T C G T A A C G T C G T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G