Information for 1-ATHCCTGTGCCAT (Motif 1)

C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T
Reverse Opposite:
C G T A A C G T A C T G A T C G A G T C C G T A A T G C C G T A A C T G A C T G C A T G G T C A A G C T
p-value:1e-13
log p-value:-3.185e+01
Information Content per bp:1.800
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.6 +/- 24.2bp
Average Position of motif in Background59.7 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATHCCTGTGCCAT-
TGACCTTTGCCCTA
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:ATHCCTGTGCCAT--
-----GGTGCCAAGT
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATHCCTGTGCCAT--
TGACCTTTGCCCTAN
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.59
Offset:6
Orientation:forward strand
Alignment:ATHCCTGTGCCAT--
------ATGCCCACC
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:6
Orientation:forward strand
Alignment:ATHCCTGTGCCAT-
------TTGCCAAG
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:ATHCCTGTGCCAT--
------ATGCCAACC
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:ATHCCTGTGCCAT-
-----CGTGCCAAG
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--ATHCCTGTGCCAT
RCATTCCWGG-----
 A C G T A C G T C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T
C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G A C G T A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATHCCTGTGCCAT-
TGACCTTTGCCCCA
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATHCCTGTGCCAT
---GCTGTG----
 C T G A A C G T G T A C A G T C A G T C C G A T A T C G A C G T A C T G A T G C A G T C G T C A C G A T
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T