Information for 5-AGACGATGGG (Motif 25)

G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
Reverse Opposite:
T A G C A T G C A G T C G C T A C G A T A G T C C T A G A G C T G A T C C G A T
p-value:1e-8
log p-value:-1.873e+01
Information Content per bp:1.685
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif449.8
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets49.1 +/- 31.0bp
Average Position of motif in Background50.3 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AGACGATGGG
AAAACAATGG-
 A C G T G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGACGATGGG
VRAACAATGG-
 A C G T G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGACGATGGG----
NNTNNACAATGGGANNN
 A C G T A C G T A C G T G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGACGATGGG
RAACAATGGN
 G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AGACGATGGG--
CTCACACAATGGCGC
 A C G T A C G T A C G T G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGACGATGGG
-AACAAAGG-
 G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGACGATGGG
GAACAATGGN
 G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGACGATGGG
-GACAATGNN
 G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGACGATGGG
VRRACAAWGG-
 A C G T G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGACGATGGG
-RACAAWGG-
 G C T A C T A G C T G A A G T C T C A G C G T A C G A T A C T G T A C G A T C G
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T