Information for 2-NYYCATTAVC (Motif 2)

C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
Reverse Opposite:
T C A G A G C T A C G T C G T A C G T A A G C T A C T G C T G A T C A G G A T C
p-value:1e-44
log p-value:-1.031e+02
Information Content per bp:1.620
Number of Target Sequences with motif181.0
Percentage of Target Sequences with motif22.05%
Number of Background Sequences with motif3083.2
Percentage of Background Sequences with motif6.73%
Average Position of motif in Targets49.3 +/- 25.1bp
Average Position of motif in Background50.2 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:NYYCATTAVC
--YCATTAMC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

HOXA2/MA0900.1/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
CCTAATTACC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C

HOXB3/MA0903.1/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
ACTAATTAGC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C

HOXB2/MA0902.1/Jaspar

Match Rank:4
Score:0.92
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
AGTAATTAAC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
T C G A T A C G G A C T T G C A T C G A A C G T G A C T G C T A T C G A T G A C

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.91
Offset:1
Orientation:forward strand
Alignment:NYYCATTAVC
-CCAATTAA-
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T

EVX2/MA0888.1/Jaspar

Match Rank:6
Score:0.91
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
GGTAATTAGC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
T A C G T A C G G A C T T G C A T C G A A C G T A G C T C T G A T A C G A T G C

EVX1/MA0887.1/Jaspar

Match Rank:7
Score:0.91
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
GGTAATTAGC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
T C A G T A C G G A C T T C G A T C G A A C G T G A C T C T G A A T C G T A G C

NOTO/MA0710.1/Jaspar

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
GCTAATTAGC
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

GSX1/MA0892.1/Jaspar

Match Rank:9
Score:0.90
Offset:0
Orientation:forward strand
Alignment:NYYCATTAVC
CCTAATTAAA
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A

PDX1/MA0132.2/Jaspar

Match Rank:10
Score:0.90
Offset:1
Orientation:forward strand
Alignment:NYYCATTAVC
-GTAATTAG-
 C T A G A G T C G A C T T G A C C T G A A C G T A C G T G T C A T C G A A G T C
A C G T T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T