Information for 13-GTTGCTAGGC (Motif 13)

A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C
Reverse Opposite:
T C A G T G A C A G T C G C A T C T G A C A T G G T A C C G T A G T C A G T A C
p-value:1e-11
log p-value:-2.659e+01
Information Content per bp:1.688
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.85%
Number of Background Sequences with motif823.1
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets49.8 +/- 25.9bp
Average Position of motif in Background47.8 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTAGGC--
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTAGGC
CTGTTGCTAGGS
 A C G T A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTAGGC--
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.86
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCTAGGC------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCTAGGC----
KGTTGCTAGGMAACA
 A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTTGCTAGGC----
GTTGCCATGGNAAC
 A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T A C G T A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTTGCTAGGC
GGTGYTGACAGS-
 A C G T A C G T A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTTGCTAGGC
NATGTTGCAA---
 A C G T A C G T A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTAGGC---
GGTTGCCATGGCAA
 A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTAGGC---
NGTTGCCATGGCAA
 A C G T A C T G A C G T C G A T C A T G G T A C G A C T C G T A T C A G A C T G A G T C A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A