Information for 6-CAATTAGTGC (Motif 8)

A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
Reverse Opposite:
C A T G T A G C C T G A A G T C G A C T C T G A G T C A A G C T A C G T T A C G
p-value:1e-16
log p-value:-3.709e+01
Information Content per bp:1.674
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif7.79%
Number of Background Sequences with motif1015.6
Percentage of Background Sequences with motif2.21%
Average Position of motif in Targets49.5 +/- 26.6bp
Average Position of motif in Background49.6 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CAATTAGTGC
BCMATTAG---
 A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTGC
CCAATTAG---
 A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTGC
CCAATTAA---
 A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:4
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTGC
CCAATTAA---
 A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAATTAGTGC
-AATTAGTG-
 A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

PH0107.1_Msx2/Jaspar

Match Rank:6
Score:0.74
Offset:-6
Orientation:forward strand
Alignment:------CAATTAGTGC-
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

BARX1/MA0875.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTGC
GCAATTAG---
 A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CAATTAGTGC
CCCAATTAGC--
 A C G T A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T

EN1/MA0027.2/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAATTAGTGC
CTAATTAG---
 A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:10
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CAATTAGTGC
ACCAATTAGC--
 A C G T A C G T A T G C G T C A T C G A A C G T G A C T C T G A T C A G G A C T A T C G G T A C
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T A C G T