Information for 2-GGTTGCWAAGCAAAAC (Motif 5)

A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
Reverse Opposite:
T A C G C G A T A C G T C A G T C G A T T C A G A G T C G C A T A G C T C G T A A T C G A G T C C G T A G T C A T A G C G T A C
p-value:1e-16
log p-value:-3.820e+01
Information Content per bp:1.670
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif24.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets62.1 +/- 25.3bp
Average Position of motif in Background51.7 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GGTTGCWAAGCAAAAC
KGTTGCTAGGMAACA-
 A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGCWAAGCAAAAC-
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCWAAGCAAAAC
NNCGTTGCTATGGNN---
 A C G T A C G T A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCWAAGCAAAAC
NCCGTTGCTANGNGN---
 A C G T A C G T A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGCWAAGCAAAAC
CTGTTGCTAGGS-----
 A C G T A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGTTGCWAAGCAAAAC
GGTTGCCATGGCAA--
 A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GGTTGCWAAGCAAAAC---
---TGCCAAAATAAACANN
 A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGTTGCWAAGCAAAAC
-GTTGCCATGGNAAC-
 A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGTTGCWAAGCAAAAC
NGTTGCCATGGCAA--
 A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGTTGCWAAGCAAAAC
-GGTGCCAAGT-----
 A C T G A T C G C A G T C G A T C T A G A T G C G C A T T C G A C G T A C T A G A G T C C G T A G T C A G T C A C G T A A T G C
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T