Information for 22-CAAATATTGA (Motif 30)

A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A
Reverse Opposite:
C G A T G T A C C G T A C G T A A C G T C G T A A G C T A C G T A G C T C T A G
p-value:1e-6
log p-value:-1.576e+01
Information Content per bp:1.859
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif95.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets32.2 +/- 25.1bp
Average Position of motif in Background41.9 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CAAATATTGA----
CTAATATTGCTAAA
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CAAATATTGA----
CTAATATTGCTAAA
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CAAATATTGA-
-GAATATTCAT
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CAAATATTGA-----
NAAANTTATTGAANCAN
 A C G T A C G T A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAAATATTGA
-AATTATT--
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CAAATATTGA---
---NTATYGATCH
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

FOXB1/MA0845.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CAAATATTGA----
---ATATTTACATA
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAAATATTGA------
AAACATAATGAGGTTGC
 A C G T A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:9
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CAAATATTGA-----
-----ATTGATTYND
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAAATATTGA----
---ATATTTACATA
 A G T C C T G A C G T A C T G A A C G T C G T A C G A T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A