Information for 21-GCACTCTAGT (Motif 29)

A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
Reverse Opposite:
C G T A G T A C A C G T C G T A A T C G C G T A A T C G A C G T A C T G A T G C
p-value:1e-8
log p-value:-1.932e+01
Information Content per bp:1.863
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif54.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets47.0 +/- 28.3bp
Average Position of motif in Background50.2 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GCACTCTAGT
NSCACTYVAV-
 A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GCACTCTAGT
AGCCACTCAAG-
 A C G T A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCACTCTAGT
RSCACTYRAG-
 A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCACTCTAGT
AASCACTCAA--
 A C G T A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCACTCTAGT
MRSCACTYAA--
 A C G T A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCACTCTAGT
CCACTTGAA-
 A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCACTCTAGT
AAGCACTTAA--
 A C G T A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCACTCTAGT---
AATCGCACTGCATTCCG
 A C G T A C G T A C G T A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCACTCTAGT-----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCACTCTAGT
ACCACTTGAA-
 A C G T A T C G A G T C G T C A A T G C A C G T A T G C G C A T C G T A A C T G A C G T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T