Information for 1-RKBCAMTSADGCRKRA (Motif 1)

T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A
Reverse Opposite:
C A G T A G C T G T C A G A C T C T A G T A G C G A C T A G C T A T G C T C G A A C T G G A C T C T A G T G C A T G A C A G T C
p-value:1e-124
log p-value:-2.871e+02
Information Content per bp:1.541
Number of Target Sequences with motif150.0
Percentage of Target Sequences with motif19.16%
Number of Background Sequences with motif570.9
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets54.5 +/- 21.1bp
Average Position of motif in Background48.4 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---RKBCAMTSADGCRKRA-
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PAX5/MA0014.2/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--RKBCAMTSADGCRKRA-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:RKBCAMTSADGCRKRA--
-NGCANTCATGCGTGACG
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T A C G T
A C G T C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Pax6/MA0069.1/Jaspar

Match Rank:4
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:RKBCAMTSADGCRKRA-
---AANTCATGCGTGAA
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T
A C G T A C G T A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:RKBCAMTSADGCRKRA-
--SCAGYCADGCATGAC
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:RKBCAMTSADGCRKRA--
-TGCAGTCATGCGTGACG
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T A C G T
A C G T C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:RKBCAMTSADGCRKRA--
--GCAGCCAAGCGTGACN
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A A C G T A C G T
A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RKBCAMTSADGCRKRA
AGCCACTCAAG-----
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RKBCAMTSADGCRKRA
--CCAATCAA------
 T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RKBCAMTSADGCRKRA
TAATTCAATGAAGTG---
 A C G T A C G T T C A G A C T G A C G T G A T C C T G A T G A C A G C T A T C G T C G A C T G A A T C G A G T C C T G A C A G T T C G A G C T A
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G A C G T A C G T A C G T