| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-41 | -9.509e+01 | 0.0000 | 51.0 | 8.85% | 266.5 | 0.59% | motif file (matrix) |
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| 2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-39 | -9.200e+01 | 0.0000 | 58.0 | 10.07% | 408.7 | 0.91% | motif file (matrix) |
svg |
| 3 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-5 | -1.344e+01 | 0.0002 | 26.0 | 4.51% | 683.8 | 1.52% | motif file (matrix) |
svg |
| 4 |
| PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer | 1e-3 | -7.026e+00 | 0.0808 | 25.0 | 4.34% | 962.9 | 2.15% | motif file (matrix) |
svg |
| 5 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-2 | -6.209e+00 | 0.1464 | 3.0 | 0.52% | 19.0 | 0.04% | motif file (matrix) |
svg |
| 6 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -6.179e+00 | 0.1464 | 152.0 | 26.39% | 9551.5 | 21.30% | motif file (matrix) |
svg |
| 7 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.550e+00 | 0.2022 | 29.0 | 5.03% | 1312.4 | 2.93% | motif file (matrix) |
svg |
| 8 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -5.351e+00 | 0.2158 | 140.0 | 24.31% | 8886.5 | 19.82% | motif file (matrix) |
svg |
| 9 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-2 | -5.078e+00 | 0.2520 | 60.0 | 10.42% | 3350.2 | 7.47% | motif file (matrix) |
svg |
| 10 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-2 | -5.046e+00 | 0.2520 | 12.0 | 2.08% | 400.3 | 0.89% | motif file (matrix) |
svg |
| 11 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.762e+00 | 0.2830 | 29.0 | 5.03% | 1393.1 | 3.11% | motif file (matrix) |
svg |
| 12 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.669e+00 | 0.2846 | 85.0 | 14.76% | 5137.8 | 11.46% | motif file (matrix) |
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