Information for 5-GGAGGCCATTGTGCAG (Motif 7)

C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G T A C C T G A A G T C T C G A C G T A C G A T A T C G A C T G G A T C G T A C C G A T G T A C G A T C
p-value:1e-14
log p-value:-3.239e+01
Information Content per bp:1.707
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.3 +/- 18.3bp
Average Position of motif in Background48.3 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
-----CCTTTGTT---
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
----NCCATTGTTC--
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
-----CCWTTGTYYB-
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGAGGCCATTGTGCAG
----NCCATTGTTY--
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
AGGVNCCTTTGT----
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG-
TGTTCCCATTGTGTACT
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
------CTTTGT----
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
-----CCWTTGTY---
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGAGGCCATTGTGCAG
-----YCTTTGTTCC-
 C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGAGGCCATTGTGCAG
CANAGNNCAAAGTCCA-
 A C G T C T A G C A T G C G T A A C T G C T A G G T A C A T G C G C T A C G A T A G C T A C T G A G C T A C T G G T A C C G T A A C T G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T