Information for 9-CGCWKCTTGRCCM (Motif 13)

A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G A G C T A G T C C G T A C G T A A C T G G T C A C G A T A C T G T A G C A C T G
p-value:1e-11
log p-value:-2.659e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.6 +/- 29.7bp
Average Position of motif in Background59.6 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM
-------TGACCT
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM------
---NNCNTGACCCCGCTCT
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM------
--NNANTTGACCCCTNNNN
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM------
---NNNNTGACCCGGCGCG
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGCWKCTTGRCCM------
--TGTCGTGACCCCTTAAT
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM--
-------TGACCYCT
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM
-TGACCTTGACCT
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM-
-----NTTGGCANN
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM--
-------TGACCTYA
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CGCWKCTTGRCCM---
---CNNTTGACCTTTG
 A G T C A C T G A G T C C G T A A C G T A G T C A C G T A C G T A C T G C T G A A G T C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G