Information for 5-GATATCCATT (Motif 23)

A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T
Reverse Opposite:
G C T A G T C A A C G T A C T G A T C G C G T A G C A T C G T A C A G T G T A C
p-value:1e-8
log p-value:-1.896e+01
Information Content per bp:1.765
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.42%
Number of Background Sequences with motif163.9
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets52.3 +/- 26.0bp
Average Position of motif in Background48.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GATATCCATT
GHATATKCAT-
 A C G T A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GATATCCATT
AAGATATCCTT-
 A C G T A C G T A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GATATCCATT
GAATATTCAT-
 A C G T A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GATATCCATT-
TTCATTTGCATAT
 A C G T A C G T A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GATATCCATT-
-ATTTGCATAA
 A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T A C G T
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GATATCCATT------
NNCATTCATTCATNNN
 A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GATATCCATT
-ATTTGCATA
 A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GATATCCATT-----
AAAATATGCATAATAAA
 A C G T A C G T A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GATATCCATT
BTVATTWGCATA
 A C G T A C G T A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GATATCCATT-
-ATTTGCATAT
 A C T G G C T A C G A T C G T A A C G T T A G C A G T C C G T A A C G T C G A T A C G T
A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T