Information for 2-CCAGCACCTTGGACAG (Motif 2)

A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A G T C G T C A T C G A C T A G A C T G A C G T A C T G A G T C A C G T A C T G C T A G
p-value:1e-14
log p-value:-3.425e+01
Information Content per bp:1.899
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 10.8bp
Average Position of motif in Background81.4 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-CCAGCACCTTGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:CCAGCACCTTGGACAG----
TCAGCACCATGGACAGCTCC
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.54
Offset:6
Orientation:forward strand
Alignment:CCAGCACCTTGGACAG
------CCAGGAACAG
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CCAGCACCTTGGACAG
TGAGTCAGCA----------
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.50
Offset:9
Orientation:forward strand
Alignment:CCAGCACCTTGGACAG-
---------TTGACAGC
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

PB0117.1_Eomes_2/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCACCTTGGACAG
NNGGCGACACCTCNNN---
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCACCTTGGACAG
GTCAGCANNTN------
 A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCACCTTGGACAG
NGTCAGCANTTT------
 A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:9
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCACCTTGGACAG
CTGAGTCAGCAATTT------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCAGCACCTTGGACAG
--CGCACCTGCT----
 A G T C A G T C C G T A A C T G A G T C C G T A A G T C A G T C A G C T A C G T A C T G A C T G G T C A A G T C C G T A A C T G
A C G T A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T A C G T