Information for 8-YYYYAWTCTCAKAKAM (Motif 13)

A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
Reverse Opposite:
A C G T A C G T G T C A A C G T G T A C A C G T A C T G C G T A C T A G C G T A C G T A A C G T C T G A T C G A C T G A T C A G
p-value:1e-10
log p-value:-2.316e+01
Information Content per bp:1.776
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 20.2bp
Average Position of motif in Background62.3 +/- 17.9bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YYYYAWTCTCAKAKAM---
---AAAGCTCGTAAAATTT
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YYYYAWTCTCAKAKAM
-AGTATTCTCGGTTGC
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

PB0169.1_Sox15_2/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
-TNGAATTTCATTNAN
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
TNTAATTTGCATANNN
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:YYYYAWTCTCAKAKAM---
---AAACCTCGTAAAATTT
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
TNTAATTTGCATACNA
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
TNTAATTTGCATACNA
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU3F4/MA0789.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
----ATTTGCATA---
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
----TTTCTNAGAAAN
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T A C G T A C G T A C G T A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:YYYYAWTCTCAKAKAM
-NNAATTCTCGNTNAN
 A G T C A G C T A G C T A G C T C G T A C G A T A C G T A G T C A C G T G T A C C G T A C A G T C G T A A C G T C G T A G T C A
A C G T A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A